NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307408_100198919

Scaffold Ga0307408_100198919


Overview

Basic Information
Taxon OID3300031548 Open in IMG/M
Scaffold IDGa0307408_100198919 Open in IMG/M
Source Dataset NameMaize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1620
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Maize Rhizosphere Microbial Communities From Greenhouse At Uc Davis, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.5Long. (o)-121.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004218Metagenome / Metatranscriptome448Y
F019902Metagenome / Metatranscriptome227Y
F094360Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0307408_1001989191F019902GAGGLREKVLRALASRAATDAGFLKQARRDLQGTLARFGYDLTLEELRLVEDLRRRTATMSDEELARKLASGLRGGTGTPPARPAAPSWRGSGPGRPARPAG
Ga0307408_1001989192F004218AGGLGHSHRYGRKQVVAKTYQLDTMASPSSLLARAKKAAYANGATLLGDEHSGRFWHEMAKGEYRMVGQKVIVTVTDKHWLLPWAVVEAQLREFVL
Ga0307408_1001989193F094360AGGMESELSGDQHQLLRAFDELAEGSTATDVTASDAAQKAGLEPDTPEFEAVLGYLVDVGYLVRAEVEGDKAFRITVAGINEVQRRPQL
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