NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308147_1004074

Scaffold Ga0308147_1004074


Overview

Basic Information
Taxon OID3300031558 Open in IMG/M
Scaffold IDGa0308147_1004074 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CBN3_325_SCM (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1682
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)80.9595Long. (o)-132.1842Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054505Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0308147_10040741F054505N/AMVAVLEQLVFDESVTLQEAAYRLNAKAVTDPIDEAALHNVLKSYLLLFGQGSKADLFDAAKHQAIMEARPREDIDDFERNAVLNFEYARRHQTNPFVPRRYSFEATSAIVADLAQRYGKWQNAECRDMKAHLVELDSEGSGRVPLGLLYAQPASASYHFSESTDYLRKIGALDETTSTPKVLIANYITGPSNCIASSSYYSVCCLSSCHSIMDEIEHKVLAPTASPERLLRIVQNISNAQELPRGLTEKLQAIAKRHGGEVPLHGRLFAQWLHFAFPHECPFPAILESAEVLSTSQWSGAEYSASSEERTTHLFSADVSTPVGDVAVEDHWIDHEVLPAHGENEPARWISLATVVRGTVQLAAIFLGLRSIFAAWRVAVGAGNDK
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