NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308135_1043014

Scaffold Ga0308135_1043014


Overview

Basic Information
Taxon OID3300031559 Open in IMG/M
Scaffold IDGa0308135_1043014 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB4_937_33.10 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)817
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)75.0007Long. (o)-150.0027Alt. (m)Depth (m)223
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012639Metagenome / Metatranscriptome279Y
F015413Metagenome / Metatranscriptome255Y

Sequences

Protein IDFamilyRBSSequence
Ga0308135_10430141F012639AGGGGGVVIMSSNNSGLVLNCTANYAAAAPIATVSPCLLQTSPVVAGVNELQVPLTENWIATDVYILATGNAAGNPTAVDPVITMDKNRGRILVQTPPLSAMLITSNTRPRFSPQPIGFEGGSIVRMFATSTVLNAGVASNVQFSV
Ga0308135_10430142F015413N/ASTDLEKQVNDLLTTKFEQSPEFEQLLPKGILGKDMIIGSVGTALSVQMGNVVGKFLPLGQLPSGTASILAGILLQKFGGSGMLKKLSEGIIQGGFATAMTPFVSGLIPAQFSQEVKTEQVTEELNPIVKGVMW
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