NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318528_10039781

Scaffold Ga0318528_10039781


Overview

Basic Information
Taxon OID3300031561 Open in IMG/M
Scaffold IDGa0318528_10039781 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2347
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002617Metagenome / Metatranscriptome542Y
F009379Metagenome / Metatranscriptome318Y
F025424Metagenome / Metatranscriptome201N

Sequences

Protein IDFamilyRBSSequence
Ga0318528_100397812F002617GAGMTDFDPERFTLRQAAQARDDFAQIMDELDFVKEQLARLPTRRDQAFVPLKIMFGSAVLSAALVILWLEAFWRHCL
Ga0318528_100397814F009379N/AVWSVKFFHDLRSLTPTRLAYISRSSEAEVAQRAAECMGDEEAARVEICRVLLNPPILAEGAEYWLD
Ga0318528_100397815F025424GGAGMRDEIARLVKALEPSFATPEDAELAASMMVMALRHEFSEPIKDEDRPRYQAALERLPKGSSATPRVVFVSPYDQKTDPHWRVMFTNGPMRYESSQRFGSMAEAETYVTDFLARLRGEINRPE
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