NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318528_10137279

Scaffold Ga0318528_10137279


Overview

Basic Information
Taxon OID3300031561 Open in IMG/M
Scaffold IDGa0318528_10137279 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1298
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002957Metagenome / Metatranscriptome517Y
F051495Metagenome144N

Sequences

Protein IDFamilyRBSSequence
Ga0318528_101372792F002957GAGGMSTITDDIEQLISRLAGPLSPRDRVAFRRAAEDALTRVPCWGEGAIYRAVASLQHAFRNPPSDRVAHWGIEQELRDTKLKNKPPIEYGGDLRHVRYRKQTR
Ga0318528_101372793F051495N/AVCGRLNYSQEPAHQSFTHFFSMKSDRVIESAIRAAQNLLWQNLPPTHKLPDAAAVARLRDLVHSPVVKTVLLHSNDTFLAFVLRAVEFVLADQFRADREIIDHLWDVLDDPHLNKALGLPPNSRMTFRRSRF
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