NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318528_10497744

Scaffold Ga0318528_10497744


Overview

Basic Information
Taxon OID3300031561 Open in IMG/M
Scaffold IDGa0318528_10497744 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)654
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031779Metagenome181Y
F067071Metagenome126N

Sequences

Protein IDFamilyRBSSequence
Ga0318528_104977441F031779N/ALLPGGFRSVFLEIDAFHRDRRIPVRRGRSRHEAEQSHIRFCFPDTATADAFRNRFGGECLTYALGKPKPRTSATSSDAGA
Ga0318528_104977442F067071GGAGMSVAPPGGQDRIMIYGPKTDRILAGVLTVASGGWLILILLGYLESLGWAQILGLFVLSGIGVASLLTGKRRR

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