NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310886_10007312

Scaffold Ga0310886_10007312


Overview

Basic Information
Taxon OID3300031562 Open in IMG/M
Scaffold IDGa0310886_10007312 Open in IMG/M
Source Dataset NameLab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3880
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6475Long. (o)-79.9369Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013352Metagenome / Metatranscriptome272Y

Sequences

Protein IDFamilyRBSSequence
Ga0310886_100073125F013352AGGMKYTLLGKLLTNSIDKYFTEYLAKNSHFASQFSSLPCLSIAIAGFLFSLIASSTNAQIEVTVDENVSTPISNSTQSEDAEPRPDILYSALNKDTIVGEVLNNFSNPIELVRITATVYDKNGIIVATGDKYVNDYLIKPGSRSGFDIFLDETLPTNSKYTLTTSFEKSMDDKPEVLQLSVGKNSKSSNTFRVLGEVMNQGKNDANAVKVSAIFYDEKHKVTDTDYVFTNPDIISPNKKAPFEFSFYVDNPEKIKSMAFNVQSDEYSLITDNGQNNTISQQ
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