NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307379_10092770

Scaffold Ga0307379_10092770


Overview

Basic Information
Taxon OID3300031565 Open in IMG/M
Scaffold IDGa0307379_10092770 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - UN-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3299
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007645Metagenome / Metatranscriptome347Y
F030892Metagenome184N

Sequences

Protein IDFamilyRBSSequence
Ga0307379_100927701F030892AGGAMENLMEICSETRMERLLNPQMSDHYYTHFHGKYGYRPYEIKVGRKWVTMRNPSHKVRMPLAKYKVHAFLQWRRDAMTDASCKVYNETGKYARPRAWWKDYGFTSNPKDFDYDQSRLAW
Ga0307379_100927706F007645AGGAGMAKYVYGKRDTKTVKSIYDIATMGEKAIWNFANSLGVNIVRVRKDKERNETTVGDTFLGYHVGKVSIYQQRGNPSKPLHFVRPTPLGKDNKGMQILEVANNLDVQEVLEALKDYQILMTGSFFGRMKLRFARLFA
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