NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307379_10969306

Scaffold Ga0307379_10969306


Overview

Basic Information
Taxon OID3300031565 Open in IMG/M
Scaffold IDGa0307379_10969306 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - UN-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)728
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002009Metagenome / Metatranscriptome604Y
F007747Metagenome / Metatranscriptome345Y
F033721Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0307379_109693061F007747GGAGGMIKPKMKIGTITFGKSRPAPKAVLVDVTMDDKTQQELHKAGLKLLAKDSEAVIEYVIRKALQYVAKK
Ga0307379_109693062F033721AGGAGGMRWIKKEFDEDGNPEWAVYIDEAGEGREDDWVHYDTFEGREEAIEACRHVTWEDYDPNDK
Ga0307379_109693063F002009N/AYTLVRIVTRPVLPEPSQMTAPTIAEMGDAAADIVWRIMGKGSEKSAYGDWLEKDRPTHDYHIARAVRHLATAQMQLHKSTPCPDNNGETATDHLERALVRCLFTLAQIKKEVPRL
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