NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307378_10852618

Scaffold Ga0307378_10852618


Overview

Basic Information
Taxon OID3300031566 Open in IMG/M
Scaffold IDGa0307378_10852618 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - UN-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)760
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000710Metagenome / Metatranscriptome925Y
F058806Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0307378_108526181F058806N/AMSWSIPTKIEEDFISGRAQYRTFQTGVGGQSILPVPTNAYAVIFGYDFSPAGGGFKMLSSLDAVTFGERPILNDVVVRFFETQQISFYTGT
Ga0307378_108526182F000710N/AMIMATNMDISYRQGIRSKGFAITAATGITQQTLSLSGLAKSFEGFLLSSAFTATPQTIIDPAQLRITLTINNDTCIDDDLAVSYALTATGGFTGGFPFFIPIPRRLTGQDTIQLRITNTAASQNVNVTVWYRNEL
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