Scaffold Ga0308391

Basic Information
Taxon OID	3300031567 Open in IMG/M
Scaffold ID	Ga0308391_1000682 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050623_t1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050623_t1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14821
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (33.33%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

14821

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (33.33%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5341	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5341

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007033	Metagenome / Metatranscriptome	359	Y
F023603	Metagenome / Metatranscriptome	209	N
F024322	Metagenome / Metatranscriptome	206	N
F038584	Metagenome / Metatranscriptome	165	Y
F044249	Metagenome / Metatranscriptome	154	N
F054062	Metagenome / Metatranscriptome	140	N
F068874	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308391_100068211	F038584	N/A	MTEEIKQIQKAAEELTATLHATAATEEETKTLDAISKAAAHIRQQLRERMPSAGTRIKVSDLRSARKLMQRYVQKTTVGANTPREYIGEAFYVTRQLVIEFVQDYLRTETLDVLAEITQVRLNPFTGAPAIVGEGGEKPTMATTPQRVTSNYQKIAFGDVITDEVLLAYPDIVEFLIWHGAYRLEVFLHNALITLLSSIASAATLPTGIISPQVADLLIYMRAFHDQQSAISRRGEWIANAAIVPFPYYWSLVFGALKSTTGEYLQLDRQLQGLTLIPAGAAQTAPTVVFNENELEVFFLGDITVNFGRVLDAASDTNVRRLSMDLFYAPLSHTGRPVIVANTQNAINSMAQ
Ga0308391_100068213	F023603	N/A	MLYTTADFTGQYRLDSNAITQADYQRAIDEHERALLEYFFEPDSVEKIYAALPVSPPAAGVRSMMRDLALPFIFGRIKMGVGSSMAGEPNTQGYTRIGYTPYLAWRGSETLRRLMRFAPFVVQAELAAPTATIPYPSPNPQAPDFVAIDDPIRAYTSAGEVQTSVVSVTATDITLAVALPAGPVRVIVENLRIRISRAYLTF
Ga0308391_100068214	F054062	AGG	MGKLLSKLHELLGRLRNLLSKLLSKLLRRRNLRELSWRDFCDGLDKDPPDDVQKKAEHIFFDHVFPEALLTFFQNASELLLLYEAALSAPAMKPIADAKFDELFKQNPIPFYESLIPALKNLGAEPEKATFLEICAFLTTYKS
Ga0308391_10006826	F068874	N/A	VFGRLRRVLRFYERVELPDVPAQAQSLSYGGRTIVSYPPSPAWAVREPLWLGRRGLGIYAPSTAKMKRRLGLPDREIVLFQTGQLYASIQVLNMKKYYLVRVQRDKLFYIIRRFPVERWLRVDASAVRAGLRNALLAALLGCAPLKKTKSVQSVEVAVKREEVVAHETLRLTTLLNDTIHLRNERIVIHYDTIRQMLRIEQVRPVVVVRDSVVRQNVVMQALPGVAEERAEKRLSWWKRWGQGVFALMLGLSLIGFIGYLWLRALRIG
Ga0308391_10006827	F007033	GAG	MQCRCSQPLWALGIPDCHPVLRPIRRVVFETVLNSSSAPADFDLPNSSLYPNARRLMTPVLYNVESDRPEAVFEELSGTKFFVRHQPRTFKALVAKPPTEWGINIEQLRCVSRLGVFLIDDAGVVWGRRVSPGEAAPIPIEPGTVQARLLFPSDATITKYEFSFDFAQSLMDFELVPVFADAGLLNYTPRVATRIFVSFVGSGVSAIVYALYARGAGNLYIPITGLAPYLEIRNNANTLITTNFTEVEAGVYQDSSLSLSPSGNPYTIRVGPGAPSGAFDYTTAVAQFSV
Ga0308391_10006828	F024322	N/A	MSLLRKLRNARQRRYLRLVDPVLQQFEFCPVWANYLTPPSPVQVDTNVGTLTIQTGLIRAFAREYDVSAYAFPFSTEERVAFHPPPIFVAHYNEFSQIAVRQKDAFLAVIPDARMGKSEWGEVEHEAFFFAPALDTEEFEVQLDRIAGVRESLLELWPKMVSITEIVPKFSRRAEWGTGEKLVKGEWIAIRLTINLKDYELNAV
Ga0308391_10006829	F044249	AGG	MTKRDALLALLGASLTIVAKKYVMVLAALIVLGSLANFLGWVHAIVSGEGCKAVKVLQGTARLVFYIVFYVALLVGLEQVASYLIPPLLSVAIIYEASLALKKAVQLNIIPAGLVRQLTKVFRHEPPEKAP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308391_1000682

Overview

Ecosystem & Geography

Associated Families

Sequences