NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308391_1004460

Scaffold Ga0308391_1004460


Overview

Basic Information
Taxon OID3300031567 Open in IMG/M
Scaffold IDGa0308391_1004460 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050623_t1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4461
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004307Metagenome / Metatranscriptome444Y
F005028Metagenome / Metatranscriptome414Y
F008499Metagenome / Metatranscriptome332Y
F025895Metagenome / Metatranscriptome199Y
F032180Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0308391_10044602F025895AGGAMSDLIAWVIAGGVILALVNSNVADGLLSALDLSDNLKRAADWASGVRGFPAVVAAICFFVMAYVFGALAYRYDLVPTWRFMQPIANDVLATGAEWLTLFVVFLTLLPTLIEIAAAKLAQRDVRMLQWMVYFFIFFDLVTDYTEAVALVEVWQRGGLFAPLPGALQGAAVVMAKIGWTFAASFAFEFLAVLFGATTLLLAANVRAASGGGGGGR
Ga0308391_10044603F032180AGGAMWWKIDPIPHQELEDWERAVGRFERAAKRDVAVRAAGAFVIYDVDGKLGYVAGREAPDGAYLVERWVRGKKGWTLYE
Ga0308391_10044604F005028GGAMRDDDLRAAMSFFAAQLRGAELDETRLLRWTRHKLRSDAQAVAELMLTVGYRPTFIRYFLRYHIPALNESAAVGETYTDLDATDAHLGLCWRLDEDVLTVLSDLHAAAKRLRQPYRDLAAVCLRWGYVHETVVRLLAKTLERKAKNVVED
Ga0308391_10044605F008499GGAMKKSRSEPRWKRKEREAIKALQAVFGRVSDPSLARLLSSTGRVGHLTRFGVDGFVGNSPGFAVEVKARKHMLTKPTLDALLQTIDRAARFDRIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELVKSKGDGDA
Ga0308391_10044606F004307AGGAMFKELIRNEEERPELNGAYVGRFLGVKERQRPTFETRLSPEPVMEDAFVFEFEVVDADLETPVRVSKWVRKPARLDHPGKSGKATNLYKVLAWLYGVSVMTDEQLERAEEFVQEAVGQEYQLTLETKPNGWCEIVHIAPVRKARNRKKEEDEEVPF
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