NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308391_1005046

Scaffold Ga0308391_1005046


Overview

Basic Information
Taxon OID3300031567 Open in IMG/M
Scaffold IDGa0308391_1005046 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050623_t1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4081
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023603Metagenome / Metatranscriptome209N
F038584Metagenome / Metatranscriptome165Y
F044249Metagenome / Metatranscriptome154N
F054062Metagenome / Metatranscriptome140N

Sequences

Protein IDFamilyRBSSequence
Ga0308391_10050462F044249GGCGGMTKRDALLALLGASLTIVAKKYVMVLAALIVLGSLANFLGWVHAIVSGEGCKAVKVLQGTARLVFYIVFYVALLVGLEQVASYLIPPLLSVAIIYEASLALKKAVQLNIIPAGLVQQLTKVFRREPPEKAS
Ga0308391_10050464F038584N/AMTEEIKQIQKAGEELLATLHATAATEEETRTLDAISKAAAHIRQQLRERMPSVGTRIKVSDLRSARKLMQRYVQKTTVGANTPREYVGESFYVTRQPVIEFIQDYLRTETLDVLAEITQNRLNPFTGAPDTVGEGAAKPSMATTPQRLSTTHNKLAFADLITDEAIFSYPNIVDFLIWHGAYRLEGLLHNNLIAAMAAVATAASLPTGIINPQVADLLIYMRAFHDLQAAIGPRGDWPAQAAILPFPYYWRLRFGALKDTIGQYLQLDRQLEGLALIPAGTAQTNPTIVFNENELEVFFFGDISVNFGRVFDGGSETNVRRLAMDLYYAPLTHAGRPVIVANTQNAINSME
Ga0308391_10050466F023603N/AMLYTTTDFTGQYRLDSNAITQADYQRAIDEHERTLLEYFFEPDSVEKIYAALPSSAPAVGVRNVLRDLALPFIFGRIKMGVGSSVAGEPNTQGYTRIGYTPYLAYRGSETLRRLMRFVPFVVQAELAAPTATIPYPSPIPQAPDFVAIGDPVRAYTATGEVQTSVVNVTATDITLVASLPTGPVRLIVENLWIRINRAYLTF
Ga0308391_10050467F054062AGGMGKLRELSWRDFCDGLDKDPPDDVQKEAEHVFFDHVFPEALLAFFQNASELLLLYEAALSAPAMKPIADAKFNELFKQNPIPFYESLIPVLKNLGSEPEKATFLEI
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