NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308391_1008533

Scaffold Ga0308391_1008533


Overview

Basic Information
Taxon OID3300031567 Open in IMG/M
Scaffold IDGa0308391_1008533 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050623_t1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2893
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007033Metagenome / Metatranscriptome359Y
F024322Metagenome / Metatranscriptome206N
F044249Metagenome / Metatranscriptome154N
F068874Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0308391_10085331F068874N/AVFGRLRRVLRFYERVELPDVPAQAQSLSYGGRTIVRYPPSPAWAVREPLWLGRRGLGVYAPSTAKMKRKLGLPDREIVLFQTGQLYASIQVLNMKKYYLVRVQRDKLFYIIRRFPVERWLRVDASAVRAGLRKALLAALLGCAPLKKTKSVQSVEVAVRREEVVAQETLRLTTLLNDTIHLRNERLVIQYDTIRQKLRIEQVRPVVVLRDSVVRQNIVMHPPAWVAEERAEKRLSWWKRWGQGAFTLMLGLSLLGFIGYLWLRALRIG
Ga0308391_10085332F007033AGGAMQCRCSQPLWALGIPDCHPVLRPIRRIAFETRLGPSSSPADFDLVNSTEYPNARRLMTPILYNVESERPEAVFEELSGTKFFVRHQPRTFKALVAKPPTEWGINIEQLRCVSRLGVFLIDDAGVVWGRRVSFNEAAPIPIEPGTVQARLLFPSDATITKYEFSFDFAQSLMDFELVPVFADAGLLNYVAGIAARILVTAFSGLIVFVYALYARGAGDLYIPITGLAAHLEVTDNTNNPITTNFIEIAPGTYRDSTVVLPPSGRPYTIKVGSSAPSGAFDYTTAVAQIGA
Ga0308391_10085333F024322N/AMSLLRKLRNARQWRYLRLVDPVLQRFEFYPVWANYLTPPSPVQVDTSVGTLTIETGLVRSFAREYDVSTYAFPFSAEERVAFHPPQIFVAHYNEFSQIAARQKDAFLAVIPDARIGKSEWGEVEHEAFFFAPALDTEEFEVQLDRIAGVRESIMELWPKMVSITEIVPKFSRRAEWGTGEKLVKGEWIAIRLTINIKDYELNAV
Ga0308391_10085334F044249GGCGGMTKRDALLAFLGASLTIVAKKYVAVLAALIVLGSLANFLGWIHAIVSGEGCKAVKVLQGTARLVFYIVFYLALLVGLEQVASYLIPPLLSVAIIYEASLALKKAVQLNIIPAGLVRQLTKVFRHEPPEKAS
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