Scaffold Ga0308393

Basic Information
Taxon OID	3300031568 Open in IMG/M
Scaffold ID	Ga0308393_1000381 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050630_ee2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050630_ee2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	23596
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	29 (85.29%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (100.00%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

23596

Total Scaffold Genes

34 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

29 (85.29%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5387	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5387

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F022604	Metagenome / Metatranscriptome	213	N
F026171	Metagenome / Metatranscriptome	199	Y
F026459	Metagenome / Metatranscriptome	197	Y
F028964	Metagenome / Metatranscriptome	190	N
F029920	Metagenome	187	Y
F029994	Metagenome / Metatranscriptome	186	Y
F038570	Metagenome / Metatranscriptome	165	N
F059420	Metagenome	134	Y
F061432	Metagenome / Metatranscriptome	131	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0308393_100038111	F029920	GAG	MISANALERAFQTERPLKGFVVPGLALSYQPREYLAIGLADHQPDADDIALVITLAREAFIIIACEPQREVVESNGVTWYLARWPLQRELVADHLPQSERRNR
Ga0308393_100038116	F026459	AGGAGG	MNSQKVEMLRTINAIEATICPSADSIAMLVAALTAMGSGETVQRALYRAERRAPNDVIKDAEELIDVLFEIGEGVIALKLERRLAELREGQSSDAIAGLWELVDLLPHDAYMAFGFAVESAQIRCGEHPNPQELLRDIDFDREGFRFGPAWEFWGERAPEAIKVARAAFIAALLHAAGLGDEPEYPESLADY
Ga0308393_100038119	F026171	GAG	MRNKSVGHNISLRTLREAIKAARLADLPVAKALKALADMPDARAFQLKPDALRRMLLESLPEQYAIVLFERAGYRVKIPLADLAYLARHDETLAEIVVSVILYLDKD
Ga0308393_100038122	F061432	GGGGG	MNERIDLLERGDSFVPATARATWSGSVNVPAGGNITLAIPGLSEVSGNIFEYVSAAQALRIKQAGIIGFLVNVVCNATGIGNLSVLMRQASPLHEWGLAVQPYYLHAGFAFAAGGTRLVNVPSGGANYQIYVVNTGGTGSFTLQTVDIRLVYLGRR
Ga0308393_100038123	F028964	AGG	MIGAEVILALTSLRSPGTRTGAIALSGSFERRAMEVAECELEISVRAPSYELSAYGDVLLVMLPDRREYYFVTAIERRNTYYVFRGETFLRYLRDYYPERYAGTSDAQWSGDAAAGVLRSLRPIEYVPVHSFSLSFRDYWIITPDNVPPSVNVNTSFAWASRLEAAQEITRLAHAQGFPLVWWFECGRWCAAKDATGNYGVEPSIALVFAHGLPRNSLFRPRWASSIKYEAWVYDRSQPSAGVALGYGHGQDRDVTRARAARGLFNSWTYWEGRLDGRATGTSAAAQAALMRWRPVEAGSGQAYSQAMPRLGDQVFLVAGDNQRCTGIAHVVSERYVVTGGQVSSAEVGVVQI
Ga0308393_100038124	F059420	AGGCGG	MEIELFRGSSTLTTLHYRNVPGQYSWVLRDFQGDLMDEVEALTRDALGGRTLLIGQQGRARRIVIVLDVQGTSMSNLHAAIRELETHTRWRSNEPPVLVLRVRAQATDPWSLQGVILEQMSAQFEDDQYRATVTLRFACRSVYWRELINTVVSSNNTLTGNAFVVNLSTMTFAPITGITDAITNIDYRPASNEWIIFTTTQVWRAPATGGAAALIGWVTGSTGLRGCVAHDGNILAVALGANQLVRFTYPSSAPTVLGLFNGAPFRVRRFGDQYASVGEFSQYQTTTGLAGMVITDVNGVITNTFSPFPSSVIFPGGGRIRDVLLRDNIGVAIAYRAASPSQSWVVVWSSQVAPYYVAEGASTWGPLEINQSSAIDDVTICADSWIHAGRTFNTLCRLRNLGGIVPYAYPTALVGGVQDGCAVERFTFSTSEPRKAFRLGDDGTAMPLFTASVNSLAVRRVGNLMCIGYATTANVWTPLTVDVSTIANTGATAEIVPRLAGLALPVFSCYSKVDTEILGEVIDPQVQAANYEPKYHGGGTVIPLPGTRYERMFSGSINEAINRYWFAVGGSVPSVNVALNRYKHDWR
Ga0308393_100038127	F038570	AGGAG	MPATHLRRVQLGQQTAFATPVAATSILRGVKDGSVTINHNDAVVEELGRSVSDLVVVSQRHAEGEIELQTTYEDILYGLFGLFGPVAPSGGSRTFNAPITAYAAPQIYTMEYGTTGAEYRVVGSIIREWTLRYEANAGVTESWAFIGRVVQANALTGSLPTRIVTPVLSRHASWFMDNVGTAHGTTQIPGTVIEAELSINTNRHLKMFEGSQPLDWGQGRWEAQMSITAEFNATAKAWVDALLTDRVARNIRANFVETANTRELRVDFVGLIGEPVELFGDRDGNMTVELTFKALVAAPLNNWLQIRTINGVATLP
Ga0308393_100038129	F022604	GAGG	VLSAVNAVHAVVAAVPGIVAAYTTVPMSANTPALPMALVTPISENRRQHAHALVRIETLVRVRIVHSPIAQGVTTSQQSALYTLADDVMTKITDDITLGGQVDHVASVDADEPSIYTLAGTDYLSISIAVRVIEKI
Ga0308393_10003816	F029994	GGAGG	MPVSFPGYRDDIPVVPGRPLLLVRCRQCGYTTVARSPNAETVRGWKLPERWPYDAPQLGATVEGVCYSCVGKARRRPGERGL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308393_1000381

Overview

Ecosystem & Geography

Associated Families

Sequences