NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308393_1001683

Scaffold Ga0308393_1001683


Overview

Basic Information
Taxon OID3300031568 Open in IMG/M
Scaffold IDGa0308393_1001683 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050630_ee2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10040
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002179Metagenome / Metatranscriptome586Y
F004170Metagenome / Metatranscriptome450Y
F050201Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0308393_10016834F004170GGAGGMSDPSLFASPLVRQAARNLHRLELMTGNLVWACELRRWYFWKAQQMLIQTPDGAAAWLPALAFAVSRERNTFVLPELAWWPLPEPLPPEALPWRDRLIRSWEQYRPVKAWGKTIRLSALVRLDRRVERLPEWLREAHRALELEPKDRYLRLAALAGWRPRPGDAPPHGDKAEAAQAWVRFWEERYRTTGSELNGWIAAAALLHLAEAGWLPSGPSPERLREKFRQPVQQWLVSYHEQLVLRMLPASVPADASAPEQRQQDIREWLKLTHRNVQWEKRELVWGMLAAWQREGVLERGGISLLPDLARTLEWEWKKDVLRAMAGYIPKAAEVSAHPKAARAVVARWEAFSRNGNWEIRQAAWVARWNLLRAGVLTAEEQGRFGADYVDAVKFEPETTALLMLAQITPPGMFPLATWAGRLSDQGDGYRLAAQMAIHDWLVEVMERASGEWRVASGRSPLTTRYSPLTTRYSRLTTRCSLLAARHSLPAITRRQMRQVLRRAGQEGTGTVAPFVNLPHDVLPDFQRLHEIETALAAGQMPPPPDAAAENRSAPRAVPARLPEAHPRMGPPGITDRTAGRTAGSEPPARHPFPEVIRHE
Ga0308393_10016835F004170GGAGGMSDPSLSPLVRQAARNLRTVEWLSENNTWSSDLSYRWDFWRIRRMMVRTPDEAAAWLPALAFAVSRENDPYILVELARQPLPEPLPPEALPWRDRLIRNWEQRPVPTEEEKSIRLFALVRLDRRAERLPEWLREARRAPDLGWCARHLRLAALAGWRPRPGDAPPHGDKAEAAQAWVRFWEKLYQHPGSQPDGLFAATALLHLTEAGWLPSGPSPERLREKFRQRVQQVQPWTTSYLERSVLRMVLGSVPAGSTIPEQQRQEIAAWLELTRGDVDWKKREAVWEMLAAWQREGVLERSGRGRLPEPPRLLPDLARALEWEDYGDVLIAMAGYVPGLAEVRAHPEAMRAIIARWEALSRNDDWLIRQAAWVARWNLLRAGVLTVEEQGRFGADYVKAIGAEYDRDVLLALAQITPPGTFPLAIWTRRLSGQDDRRRLAAHLAIHSWLVDMASGGQSRQVRQVLRRAGQEGTDARTVAPFVNLPPEVLPDFRRLREIETALAAGQIPPPPDAGKGKRKRMGHLATLARLPEAQPQMNPPGNTDRSAGAEPPVRHPFPETIRHE
Ga0308393_10016837F050201N/AMLHLAEAGWLPSGPSPEQLREEVRRWVQQLETTYQDRLLLRMSLASFSAGSPSPEQQDITGWLELTRKYVDWRKREAVRGMLAAWQQESVLERSGRGRLPEPLPDLARTLEWEEDDGVLRAMAGYIPGAVEVSAHPEAMRAIIARWEALSQSDNWLIRQAAWVARWNLWWAGVLTVEEQGRFGADYVKAIGAEYDRDVLLALAQITPPGTFPLATWAGRLSDQDDACRLAAGLAIHGWLVEVMEGASGEWRVASGEWKFTTRYSLLTTCHHPPANAAGPAPGRAGRRDGYPVRQSSAGGV
Ga0308393_10016838F002179AGGMSDPSLFASPLVRQATRNLHTVEWLSGNGTWRFNWFCRWNFWRIRRMRALTPDEAAAWLPALAFTVSCEKDADVLAKFAWWPLPEPLPQEALPWRDRLIQGWEQYPAATSWGKTIRLSALVRLDRRVERLPEWLREARRALELEPEDRHFHLAALAGWRPRPGDRPASGDIRKAVSQWVQFWKKLYRAPGSELDGLIAAAALLHLAEAGWLPSGPSPERLREEFRQRVQQWPTRTWEDAKILRMLLA
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