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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031568 Open in IMG/M |
| Scaffold ID | Ga0308393_1001768 Open in IMG/M |
| Source Dataset Name | Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050630_ee2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9717 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (78.57%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5387 | Long. (o) | -110.798 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F026171 | Metagenome / Metatranscriptome | 199 | Y |
| F028964 | Metagenome / Metatranscriptome | 190 | N |
| F029920 | Metagenome | 187 | Y |
| F059420 | Metagenome | 134 | Y |
| F096157 | Metagenome / Metatranscriptome | 105 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0308393_10017681 | F096157 | N/A | QQLGHILADLKPVAQDALHAIGELFAALAPHVQNILRALAPVIAQIGNALLTFTRTFSAVIREALQTLTSFVRAIAALLRGDIDGFFRYLGDSVKNLRELVTTAIRGAVETVGNLIGVNLTGVLSFIERVNNALLSVRNLGLNVAQAAGNALSSIRLPFGAGAQQQQQTMQNVTNNYMLNVNAASSQGVMSDFELMRRLGWR |
| Ga0308393_100176812 | F029920 | GAG | MISMHALERAFREEHPLKGFVAPGLALSYQPREFIAIGRIDRQPDAEDIAQVVALAREAFIIIVCEPQREVISSNGVTWYLARWLLKRESVADHLPQSERRNR |
| Ga0308393_10017682 | F059420 | AGGAGG | MEIRLFRGTVTLVNLHYRNVAGQYSWVVRDFQGDLMDEVEAITREALGGRTLIAGQQGRARRIVIVLDVQGTSMPNLHAAIRELETHTRWRKEPPLLLLARAQAADPWNVIEVVLEQMSAQFEDDQYRATITMRFSCRSVYWRELISTVSASNSTLTGNAFVVNLSTMTFAPITGIAETVFNIDYRAASNEWIIFTSSNIWRAPATGGAAALIGSVTGTNLLRGCVAHDGSIIAIAQSVNQLVRFTYPSSAPTVLGAFNGTPSRVRRFGDSYVSVGEFSQYQTTGGLAGYVVTNVTGAITSTFSPFPTSIIFPGGGRIRDVLIKDNIGVAIAHRVPSPSQSWVVVWSGQVAPYFVAEGASTWAPFEIDQSSPINDVTICADSWIHSGRAFNTLCRLKNLSGILPYAYPTAPIRGVQDGCAVEQFFVATSEPRKVFRLGDDGTVMPLFAASENSIAIRRVNNLMCVGYVSPATVWTPLTVDISAIANTGPTAEIVPRLGNLSVPVFSCYSKVDTEILGEVIDPQTQAANYEPKYHSGGAVTPLPGTRYERMFRGSMNEEVTRYWFAVGGSVTLNNVMLNRYKHDWR |
| Ga0308393_10017683 | F028964 | N/A | MIGAEVTFALTSLRSPGTRTGALALSGSFERRAMDVAECELEISVRAPSYELSAYGDVLLVMLPDRREYYFVTAIERRNTYYVVRGETFARYLRDYYPDRYAGTSDAQWNGDAAEGVLRSLRPIESVPVHSGGVNFRDYWIITPDNVPPSVNVSTSFAWASRLEAAQEITRLAHAQGFPLVWWFECGRWCAAKNAAGNYDVEPSIALVFAHGLPRHGLFRPRWSGTVKYEAWVYDRSQPTAGVALGYGHGQDRDVARARAARGLFNAWTYWEGRLDGRATGTSSAARAALMRWRPVEAGSGQAYSQEMPRLGDQVFLVAGDHQRCAGIAHVVSERYTVTGGQVSSAEVGVMQI |
| Ga0308393_10017687 | F026171 | GGAG | MSRELRTLRAAVKSARLADLPIAQALKALADMPEARAFKLVPDVLRRMLLESLPEQYAVFLLDRAGYRVEMSLADLAYFARYDEILAELAVSVILYLDKE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |