NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308393_1021397

Scaffold Ga0308393_1021397


Overview

Basic Information
Taxon OID3300031568 Open in IMG/M
Scaffold IDGa0308393_1021397 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050630_ee2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1743
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002372Metagenome / Metatranscriptome566Y
F002795Metagenome / Metatranscriptome529Y
F015735Metagenome / Metatranscriptome252Y

Sequences

Protein IDFamilyRBSSequence
Ga0308393_10213972F015735GAGGMVVYHHWSVEWHSRSDPPYGLPRVVCIARRAVSDPWCGPGPFPADVDRAVRFWNLVASGGARDHGAGYEVVWRLSVVVDGADGDAPPDGAWSDDPVYRARRRLLRWVMRSQCLIPALADHFADEHFRDHPAYFGLLEPGA
Ga0308393_10213973F002372AGGAGMPTRREDALWQIVHRKSSHLRALLDSLDLVDVGVTYELDFYPYAIVELLRVRDDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSMGGAEGV
Ga0308393_10213974F002795GGAGGVPVTSGLVLRGMVAAYREFTSRKNGRVYRVVTVYGDLVAGEDVLCSVDGYDVFVDSPDYARGEVVEFPARLQFLRDGSGKPVIRLYVDEGVG
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