NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307489_10329103

Scaffold Ga0307489_10329103


Overview

Basic Information
Taxon OID3300031569 Open in IMG/M
Scaffold IDGa0307489_10329103 Open in IMG/M
Source Dataset NameSea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 1.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)997
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium TMED194(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004712Metagenome / Metatranscriptome427Y
F066802Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0307489_103291031F004712AGGAMSIVTIVTSQAPDAKPVAVNLVLSTNWQEIINVPNYEVPELVFGGSTTVEPGVGEVISPLVLCNTSANTVNVDVQVYRYDTNTNFYIIRNMPVPSYDTIPIPLNGQFLKSGDILE
Ga0307489_103291032F066802N/ARPKMKYQGSIQGPVSNGALASKTGMKPNHAYIIADDMNVSHYEGDIYYWDGSAWQFDGPNNTDLLDAFAGAWDRMRTNLVTNYSPDSTHSLMIEGLFNDCLKGNVLKPSTLIFGSLVESIAHQFNGASAGVNRNALPLNFRNLGSAISAIASVLNEDGGRIRWSGADELNNQYFARGLKINGRTGRIEGRPFTSSVRKLARRASNSRANI
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