NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318515_10202065

Scaffold Ga0318515_10202065


Overview

Basic Information
Taxon OID3300031572 Open in IMG/M
Scaffold IDGa0318515_10202065 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1065
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000590Metagenome / Metatranscriptome1005Y
F003429Metagenome / Metatranscriptome487Y
F010674Metagenome / Metatranscriptome300Y

Sequences

Protein IDFamilyRBSSequence
Ga0318515_102020651F010674N/AIFVFSALIWSNIVGVVVGIVAFSGFRSIGMINLVGV
Ga0318515_102020652F000590GGAGGMLSMLKEALEWLNRAKEAREVAGQLTDPGASKAVLELAQSFNRLARTAATPAVLRRRELARRDRERSW
Ga0318515_102020653F003429GGAGGMCQQRGILTPEERARVVQLQDLLIERFVEHREAVAEGQEERVRTVEAQIDSLLREKKEIEKWAAVGSA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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