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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031573 Open in IMG/M |
| Scaffold ID | Ga0310915_10018851 Open in IMG/M |
| Source Dataset Name | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4163 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Puerto Rico: Rio Grande | |||||||
| Coordinates | Lat. (o) | 18.321 | Long. (o) | -65.8172 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F057041 | Metagenome | 136 | N |
| F086452 | Metagenome | 110 | N |
| F096165 | Metagenome | 105 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0310915_100188512 | F086452 | N/A | VWPIPESPFFRKSCSPALILLTFLLLGQSAAAADTNSLDDAILVLVDRVAAIPDLHGPLRLEFATGDGVAASPGKTWQESFKKELEARHLGLTEEPSAPPLRVALTATPTQWILVASVRSSDHDEVRLVSLPRASIRLPAMPAAPLRIERQLVFESPERILDASSLWNGSEGGIVLLAYRNGQLTALQTDRAGAVKQLIPILAADPQPSRDPRGELSAQGTDVEVLLPAKTCSFGWASHSEVKCRVVKPVWRATTVLTPPCDPAGWKIVTDGRDWAVPEMFQVVPDSSAREGSAAILSELPGPILNVNAEQNPASALVVTRNLHSGDYEVYRITLACGN |
| Ga0310915_100188513 | F096165 | N/A | MINTIPSARHSSAQSAEEKPSPCESLRSEKAKVYGFHLAQLNETQMEEKAKEIDAFWKRVQADGPAGTACVRTMLEQEKADHNFQFDAASMLYQADHSPATLTLVRDSIAQADFQDSDPASYLSLALELGQSGVDIQVLAAKFLRYPDAVIHVPEHALDLDSDTAALFLYGSMEPVLASKALIEQLKAPELNVRSAAAHLLAEQMTEESFRALSQWDGFPKIDEEFRRNDIQAIMKFKAPNPDDFAHPKWTREQVLRVIAGLPHTHKEFDDVMATKGAAFDQRVREKKPSQEELSKIVAESEPIYGIADRNAFIASAVATLKPEDFVTIREARRKSLFNVSDESLSEYLAFTQVMIGLLNRLDLYKEYRSR |
| Ga0310915_100188514 | F057041 | AGGAG | MGRKTSTAALDTSSQRPLQTSRRVPRRPAGEIAISQEDRMNGTNQKREPRNFRTILPVILRITCSLILWTLGATMTISAAQAGERHEVTNFPIDRAHLEALQRWVNSGHDEWCRDPEFVASAAIRRISPEFSDSGMALVSLPLETEHARVTRVVYTYHSLDGRTTYRVTVRRFRWLLPTAGTFHQMIWVPERAEAITRDTLEKPVAQKFH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |