NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310915_10094209

Scaffold Ga0310915_10094209


Overview

Basic Information
Taxon OID3300031573 Open in IMG/M
Scaffold IDGa0310915_10094209 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2012
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006474Metagenome / Metatranscriptome372Y
F007961Metagenome / Metatranscriptome341Y
F009509Metagenome / Metatranscriptome316Y

Sequences

Protein IDFamilyRBSSequence
Ga0310915_100942091F007961N/AYRGDERTSELLLTQDMIRQLAFEAQFRNMNIGEFVGELLIAIMKRDLFQHVLLEPNSKQP
Ga0310915_100942093F009509N/AMNWRRRLFRLWIVGSALFVIAVAFICYSEIKSYAEVPWPKLEMCATIAFGFPLVVLILGWAFLGSAAKQP
Ga0310915_100942095F006474GGAGGMRGAENDEPETSFQRGYQQGAIDLFLAIERCLDPTTREVLQAWIEKDVSMWRAKAMLGHPPNWRLNMIAGPRSAGRPLGGLDLRYAPGAGL
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