NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310915_10178571

Scaffold Ga0310915_10178571


Overview

Basic Information
Taxon OID3300031573 Open in IMG/M
Scaffold IDGa0310915_10178571 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1478
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005032Metagenome / Metatranscriptome414Y
F005719Metagenome / Metatranscriptome392Y
F065322Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0310915_101785711F005032N/APLEMRVNVALHESALEVTPKEAIVQPIQLTEVSRQSTNLFSAGEVAETIGADLKTINAWLQVGAIDRAVFGGGRFSKYELQRAALTFELVKFGLSASSARDVVWEMEYDLQQIWAGTISNQYKAYAVVIPNKQQKWLVIWCWKLSTEEVDPSPQGHIILPISDILARVTNDTEQARQY
Ga0310915_101785712F005719N/AMSIDLTRDEIWFLKALRAAGERGRAVSAPASRAGLARLVEVQYVTQHPQSERNTLYIITDRGRQALANSPQ
Ga0310915_101785713F065322GGAMIVGVLWLEEYVRDQFVSALQISSQVDRGRRGWTGDQVDSLLKDTLLVFGSLAILPTPMVLALAIAETRPGGASWKLLTFICCTVAAWFLFFADNSGLLIAFVAWLLAWACALAMRMSFIRRLA
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