NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310915_10219416

Scaffold Ga0310915_10219416


Overview

Basic Information
Taxon OID3300031573 Open in IMG/M
Scaffold IDGa0310915_10219416 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1333
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000570Metagenome / Metatranscriptome1017Y
F009542Metagenome / Metatranscriptome316Y
F010862Metagenome / Metatranscriptome298Y

Sequences

Protein IDFamilyRBSSequence
Ga0310915_102194161F010862N/ASTAPLFAQAQQPNAAELAQKVVSIISGDKAKTQTYCQILDLSDELDQADQQKDREKAGQLSQKINELQKKLGPEYLALLKATENVDPNSKDGQEIVSNLVKLDNSCGQR
Ga0310915_102194163F009542AGGMSTMVKRVAQALQQEMGTAPFDETAAFALAHAAIAAMREPTEEMLDAWIRAPGAIKGGWQAMIDAALQGK
Ga0310915_102194164F000570GAGGMNKQTVALMALFALASDIGNATTYEDIAGQWCGDVTDYVFAPNALTVKFHDRRPENIFKITKYTYTNDSVRIDWLNADGKESVTVFAEFSKSKMAQQENEDKPRRPFHRC
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