NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310915_10348569

Scaffold Ga0310915_10348569


Overview

Basic Information
Taxon OID3300031573 Open in IMG/M
Scaffold IDGa0310915_10348569 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1050
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004492Metagenome436Y
F058236Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0310915_103485691F004492N/AIVVKMGAQQEFSFFDHFEELLFDRIGTPPRNSAANVEQIRQSTQERIQDTIFEMNKFVVDKNPMVGLAWKDISDAVQAKFKDVPEPARTKQIEDLTRQTYYVYIFLSLYARMDDLRSRGILSPNDEMILGWKRSWLPNLMTSELGRWMLDNNLMEYYSEPMIKDLREAAGATGSSPPPPPSTR
Ga0310915_103485692F058236N/AMIALIGFWTLRGYVGRWFTTDYDKLPEGALVSDATTLSWLGLSDKGWFCEEPHYKGTLLHLRHKVFQAKDVIIFVHGFTGDYVSTWGKPKVLLDDPRFNRNYDFVFYGFKTTFHRDLP
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