NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247727_10246108

Scaffold Ga0247727_10246108


Overview

Basic Information
Taxon OID3300031576 Open in IMG/M
Scaffold IDGa0247727_10246108 Open in IMG/M
Source Dataset NameBiofilm microbial communities from Wishing Well Cave, Virginia, United States - WW16-25
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1573
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Virginia
CoordinatesLat. (o)38.1667Long. (o)-79.633Alt. (m)Depth (m)9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063430Metagenome129N
F068627Metagenome124Y
F068642Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0247727_102461081F068642AGGAGMRTRSVCEVPEALRRHNEEQLRDPQTVVHNLGRRVRVVVLWRQRDDDPERWIYLERMPPDDFSYETVKQRWGGGAYRIRVFGAWDRARRQERYITQVAFWI
Ga0247727_102461082F063430AGGTGGMGRARPDLIRVLEENPPGPHAGITLVRRVRTREYRTEIGPRGYLSQIEAAAFLGKSVMAVNRYVRLGLLRDTTRYGISMIQLAELRRFGREYLEGGKGGRLRRGAGAERRRARRS
Ga0247727_102461083F068627N/AVSVGERKDHGLRLDRSPVATGAIEPLLTAAEVGRLLAIPTKRVYEVVGHLAIQLAPHTRRWRLSDIAALIEARRRSK
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