NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307376_10147958

Scaffold Ga0307376_10147958


Overview

Basic Information
Taxon OID3300031578 Open in IMG/M
Scaffold IDGa0307376_10147958 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - TR-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1626
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000710Metagenome / Metatranscriptome925Y
F002259Metagenome / Metatranscriptome577Y
F036684Metagenome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0307376_101479581F000710N/AMANMDITYRQGLRTKGFQVTVPTTGAQQTLSLSGLAKSFEGILLSSTTSAAPGTHVDPLQLRITLTINNDVCIDDDVADMYATSTGGFTGGWPYFIPIPRRLTGQDTIILRVTNSSGASQ
Ga0307376_101479582F036684N/AMANQVSKLNYVDAKLGAPTSGQQTTRYIYDSVLPGVGGTNVTFFQNFAGKTQFQTNLTTNKLDSMESMVIKSIFIAIDRGESGTLNLTGHLNLNIYVGNQCVLKDFDPSFNSTNRGLSFDRLHSGAGYNTVVEVRLLTDIVVPPQVNFKATLELAENTAVANTSITLGLKGYGKIFSAGMSF
Ga0307376_101479583F002259N/AMALSAQDKMIYVANKLGLSTLKNMQGSTRVIYDQSTTAALDHTLFAGSAQRNFPLTNLGANGNQFQVDEALLIEQIGFFIPDADDGQNYNGLAPSPNAPISVKFDLVIGNKTVIKDAVVEGAGQQAFYNDGQVGSSVMTLEGVGILIPPQVEFYVRASAFITTTRVASSQRLGCYLFGTAALLNFNTTI
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