NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307376_10372192

Scaffold Ga0307376_10372192


Overview

Basic Information
Taxon OID3300031578 Open in IMG/M
Scaffold IDGa0307376_10372192 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - TR-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)943
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019119Metagenome / Metatranscriptome231N
F037129Metagenome / Metatranscriptome168Y
F077051Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0307376_103721921F037129N/ALMNKKKDYKIVEVTHGFQTKYTVKKRVFWIFWKTVKNNAGFDIAYDTKRAAQSYINFLK
Ga0307376_103721922F019119GGAMSIVEKIIKMDRAIRTEMEALSAKIAEEHYNITDGVDQNLHYLWYMYHKGSKAGMFRPFVYMAELQLLKHMGYIDDVEIKNMIRMLESEDQDNLHMVTLSIKNFRELRLQEHGEYSKVNQAYWKVAKNYGHEILNHEIFMQTIAAK
Ga0307376_103721923F077051N/AMTENDLTDLGFNKIEIKDLESQNGYDYFYYTLEVFDNLTLCSVDSDMVTDDNWYVTNLEWPDHFRLQTPQEVDSFLQSVGYQVQV
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