NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307996_1000351

Scaffold Ga0307996_1000351


Overview

Basic Information
Taxon OID3300031589 Open in IMG/M
Scaffold IDGa0307996_1000351 Open in IMG/M
Source Dataset NameMarine microbial communities from David Island wharf, Antarctic Ocean - #35
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12288
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (27.27%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5781Long. (o)77.9617Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006322Metagenome / Metatranscriptome376Y
F010877Metagenome / Metatranscriptome298Y
F084717Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0307996_100035110F006322N/AMPTKRDKSGAIIAGKGVNLTDLQEQFLEGIRNEGMESASKLSKELNYTSFYRDRRNYGTAFYKELMKITNAELSSIEAAKGTNLTALIRIRDNAIAGGDMKAAMESIKIINDMQGYKAPTKVEQTKFDIKATIDLTVPVEENDGFLDIDFTDED
Ga0307996_100035111F010877N/AMTTESFLIALAGNGLPKGEMKAEMFRFHNSMVGKSVYFVKEENPNTGCGSCIQRVKTAVWKWYHLDETAPKYNRLVFLKLGAHNIPLYSVTDAN
Ga0307996_10003517F084717N/AVNDLTTIYELFKQFGDGHKMVNEFKLLNSLEDLENIEINHRGLFIALEDANISRQDGSPVYDVNFNIIIVDRVSLDSPLELINSNQENLFVMGQLQDFFIQNLIGEQSFEEVSMRGFSSEDYNITASVSSATFVTGRSPYLKGIDI
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