Scaffold Ga0307996_1001772

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307996_1001772

Scaffold Ga0307996_1001772

Overview

Basic Information
Taxon OID	3300031589 Open in IMG/M
Scaffold ID	Ga0307996_1001772 Open in IMG/M
Source Dataset Name	Marine microbial communities from David Island wharf, Antarctic Ocean - #35
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5848
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (90.91%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Southern Ocean
Coordinates	Lat. (^o)	-68.5781	Long. (^o)	77.9617	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F043827	Metagenome / Metatranscriptome	155	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307996_10017728	F043827	GAG	MDRITMKKKAALGYFDTNANDDVWRKVGSFSKLAVWVDDSIEGYLDVEVVDNSVSHKRSPQRVKRVLRVQLSVGSFKNAFHIDMTQLDHRYGGRGIAAKAYRYIIKKLGLTIQAGTAQSKGGRKVWFDLAQINDLNVYVQSKYSKKYVVGIDTEEREVWHPMKEIYDGDKEMYVFATAA

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