Scaffold Ga0307996_1003122

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307996_1003122

Scaffold Ga0307996_1003122

Overview

Basic Information
Taxon OID	3300031589 Open in IMG/M
Scaffold ID	Ga0307996_1003122 Open in IMG/M
Source Dataset Name	Marine microbial communities from David Island wharf, Antarctic Ocean - #35
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4462
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (11.11%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → Leptolyngbya	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Southern Ocean
Coordinates	Lat. (^o)	-68.5781	Long. (^o)	77.9617	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025849	Metagenome / Metatranscriptome	200	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307996_10031225	F025849	N/A	MNFNLFRYLVQVIGDSTPTRQKDRKKETKNDVYLQNENVVGEWISLSLDKKSFTNLERVEINEKLKLPYEGRQLFTRWTHSYPNLNEIKSKTFYIKYDQQLSAVHKIMLNNFQNKYFYHVIDDVMYSLKLKTTERDSLLAIIYSPVLYLQNNFSIDFFDIWIDEIYIHQEPKVNKFLANNIPNLEPFSYITIKFLYTTKLPVKKPEPLW

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