NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307996_1003362

Scaffold Ga0307996_1003362


Overview

Basic Information
Taxon OID3300031589 Open in IMG/M
Scaffold IDGa0307996_1003362 Open in IMG/M
Source Dataset NameMarine microbial communities from David Island wharf, Antarctic Ocean - #35
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4297
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (5.88%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5781Long. (o)77.9617Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040861Metagenome / Metatranscriptome161N
F048411Metagenome148Y
F062174Metagenome131N

Sequences

Protein IDFamilyRBSSequence
Ga0307996_100336213F048411N/AMRIDINWKNGTYTFKHGNRIVTKSTLQNKKVCDNITNEINEMFKQLEI
Ga0307996_100336215F062174N/AMITKELDTYISYDRKIKRMQDVMGGGFRMEMCAEYCKPLITDGFDLEDIVEYFILELRDYSDNRYDDDIAKDKEREQLDKND
Ga0307996_10033623F040861N/AMLEKLKPLRSTPTGIYFRMADGRIGYANHQYARVSVTREGIRNGQYYKEDCSIGDRMYQINKKINYPHHETSSINMIGRVRYNDISEAINALQLFNCKNCGEGAIEYRKNKILKEYNEHKALNIRSVLTREEIEAVLPLQDAYNKGHDDGRENGYEDGYNEGFSEGVISVEEKLNKLLNT

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