NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307996_1007365

Scaffold Ga0307996_1007365


Overview

Basic Information
Taxon OID3300031589 Open in IMG/M
Scaffold IDGa0307996_1007365 Open in IMG/M
Source Dataset NameMarine microbial communities from David Island wharf, Antarctic Ocean - #35
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2905
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5781Long. (o)77.9617Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004866Metagenome420Y
F005243Metagenome / Metatranscriptome407Y
F006666Metagenome / Metatranscriptome367Y

Sequences

Protein IDFamilyRBSSequence
Ga0307996_10073654F005243N/AMASKEINQEDPQLSKEELATRRAEITEFYKDNIPHLEVQADYEMLLSAIEKARAERMQAQMFMAQQYAEQNKDGAVSPDSDEAKAFKDAMESAASKIK
Ga0307996_10073656F004866N/AMALVNNVGLQLKVDKDKCIQYQLVTYCFFENILISNSDLKFLTELSKNNGVELTKFCISLVDQGIFKSPQSARNAITKAEKKNLITKDGVNKKTISLSKGLNIQIQGLVLLDYKILGLES
Ga0307996_10073657F006666N/ALNPKSHKSFREDIADEVGVHKSVVDDFITFYYAKVRKKLSSLDYPRINIEGLGTFYLRKNKLEKAIKKNKSFLGNLTKRTYVGFAKSEDVQINIDQMEKAMLQMEKDIKNKKDFRNVK
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