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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031589 Open in IMG/M |
| Scaffold ID | Ga0307996_1010657 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from David Island wharf, Antarctic Ocean - #35 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2399 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Southern Ocean | |||||||
| Coordinates | Lat. (o) | -68.5781 | Long. (o) | 77.9617 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F042905 | Metagenome / Metatranscriptome | 157 | N |
| F042906 | Metagenome / Metatranscriptome | 157 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307996_10106572 | F042905 | N/A | MIVHLNKTHAGYYNYEENKSPINNDFLRTEINLDILHGCSQMCPGCFIPRKNLTNSDHLTTLYNTLLESSYYPDEIVVGPTDIFDAENFDEIMQHPAMKDLYGISAIGFLTTLNQPIEVIKEKLEKIWSLYEGIDRTPDIDFKIVLDINQYINKDIRMIDWYKKLALFEEGSVQLRVNWYEGIFDKISYNDLCQKVFDDFNAPIVITPSFLTDRNVRGKVDKHLKMFREDLLNQNIDSKWRNLYTFFDSRFNGYGCQNYSFYNGKIYVNPFLYDAIIQRTPEFESKIDEPTLYENLEYAKTTDDCNGCEFLMSCAERNIHMYMRSRKIKGCVALKEYMHHANN |
| Ga0307996_10106573 | F042906 | AGGAG | MPIIKNNLYYELTTETQTKPVSAVKIQLDVLDGCHHKCPGCFVHRRGNASDVHQLDSAKEFIRNITDKGILVDEMLIGPTDFLASENFYEVMPHLVDIVNENSPILAFVSTLIDGDISRFCEFLKDNINLDTEIEIGIATNPHKFMSIDYMADMQNKLRYLDEHIKHEITYTFVVNIKDYGLDYAALHEHAVKTFDTILDFIPSVSRSHRANIILETLDKFNDYFNVLTRDSTLNNIMVDHSHAGMNYTVLNYKRGEWYLSPFMYENMAIYHDMFKVQTFEDAVTITESQIDRAKNTECESCPMFFSCYNRKIILLRDYLGVNRCIAPKENMINNIHNYNAPAQEMYDWDGYSVDADKKGYRKKF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |