NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265313_10108595

Scaffold Ga0265313_10108595


Overview

Basic Information
Taxon OID3300031595 Open in IMG/M
Scaffold IDGa0265313_10108595 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1222
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location
Location NameUSA: Seattle, Washington
CoordinatesLat. (o)47.6516Long. (o)-122.3045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034274Metagenome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0265313_101085951F034274N/ANDPIAGRTQLVQQPNGAIQLYFPNATGVARMTSVDDGQTWAGPFQTQSHDVGGVDGVAVAPDGTPYFSQDGTGFVNVFRGLDGDTVSNVFPFCCGYGESLAVDSSGLVQVAFYSNKDPDGTFLYEPLNGSLAPGAATLLKPTAPHDDRVPLVSDRSGNTFMAWPPGYPTAVAFTVVPFRGGSPAGDGVSFQGVFAGGDPHMALSVDANDRLWAVWTGQGKVHAARSRSHGADFGAAVSVALPGTGYQVSALGLTGSVDVIVNIGATLVEQQLLPGLSVRVYKVGKKQWWAQALDDGFGVRGATFAIKGHTFHGNTAGKAKVVAGSGKAAAPGYVGAAFKVP
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