Scaffold Ga0302116_1042258

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0302116_1042258

Scaffold Ga0302116_1042258

Overview

Basic Information
Taxon OID	3300031597 Open in IMG/M
Scaffold ID	Ga0302116_1042258 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - AG5_SCM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1758
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Eukaryota	(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	70.5467	Long. (^o)	-122.9077	Alt. (m)		Depth (m)	24
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F082061	Metagenome	113	Y
F089757	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302116_10422582	F089757	AGG	MMATSTLHNISRSMGCAMMMTGDKTSIVWLIVGELTVHFFVKIVRGDFLFFVPIEGLLGYMASFLWHLTTKIIGDFRSVSSHT
Ga0302116_10422583	F082061	N/A	MRGYYNCGPVAFTSSMLWAQVFPFVALQFFEGELKSEIEIGLIVSLTIWLLLNIAFFCTIDLAYLPTFFGTMTGPQYVIQLYKEAKDDSVRWHAVFTHRISFTKPIHGEIKEWVKENIERWRSENLSWFQVDLIPDEFLPVDVFEAEGGAKRRRRSSISVREII

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