NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307930_1115523

Scaffold Ga0307930_1115523


Overview

Basic Information
Taxon OID3300031600 Open in IMG/M
Scaffold IDGa0307930_1115523 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #46
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)862
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.457Long. (o)78.1911Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000656Metagenome956Y
F018128Metagenome236Y

Sequences

Protein IDFamilyRBSSequence
Ga0307930_11155232F018128AGGAVLVMTDNADQAARMRAMWSVVVLTSLNDAIRDASRESKKNKGRALNNLTLWANSRNGREVLRMAGIDPDKRVTDSMVAFAAKGVPTTQPGKKWTSL
Ga0307930_11155233F000656GGAGGMHMPRNGFDSLAAVARLNTDNTMHHRERWPSLDWVWDELDELRRCQDEAIDPDYHEAALYERDALSEAAEQRDALSEAVRLLLEPEPDMERVQDILMGCW

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