NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307930_1139453

Scaffold Ga0307930_1139453


Overview

Basic Information
Taxon OID3300031600 Open in IMG/M
Scaffold IDGa0307930_1139453 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #46
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)754
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.457Long. (o)78.1911Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001408Metagenome702Y
F002402Metagenome563Y

Sequences

Protein IDFamilyRBSSequence
Ga0307930_11394531F001408N/AMKNYFKRTRHHLHAIVGITGGFLASLALSWVWLGFRNLDALDKAILFICPAFVIGYAWERYQGIINKWDILVSGI
Ga0307930_11394532F002402N/AMHYKGTKEECEDYNTKVTLGENYQDSTNNWANVTSNQNGEGFAILKHENYESDMTLIDKIPDSWFNNTEL

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