NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307930_1186025

Scaffold Ga0307930_1186025


Overview

Basic Information
Taxon OID3300031600 Open in IMG/M
Scaffold IDGa0307930_1186025 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #46
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)609
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Maveriviricetes → Priklausovirales → Lavidaviridae → unclassified Lavidaviridae → Organic Lake virophage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.457Long. (o)78.1911Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019281Metagenome230Y

Sequences

Protein IDFamilyRBSSequence
Ga0307930_11860251F019281N/ADVISMRQIPNYIYMVVKPSYNSQKPQFSNHLCFPITGMNITFNNVSGLLTSYSQEDLYQMSRRNSSNQNWAEYRGVVKNKSGNVSAGIGSIIVIDPVRDLGLSDFLSSGSLGQFSFQATVTYNNIYGHTFSAGNTSATSDEFNAIEIATVCNYGGILINQSGSSSTMSGLLTKQSVLEAKAGNKPTINYEELTELVGGNFTK

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