NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307993_1171035

Scaffold Ga0307993_1171035


Overview

Basic Information
Taxon OID3300031602 Open in IMG/M
Scaffold IDGa0307993_1171035 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #260
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)544
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5958Long. (o)78.1913Alt. (m)Depth (m)18
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046426Metagenome / Metatranscriptome151Y
F080139Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0307993_11710352F046426GGAGMKLKLKLGTVLVCLMFSMGCSIATQMIAPVANFAIGLYNADDYYSKECLWYNEVKLNDDTKKWLLESNPPEGVSKDLAVISKNNDIYKEVCNEKKS
Ga0307993_11710353F080139N/AALPDRWVQKVPILGTVWPIFNWLAGNIFNNINHPKGMAAKVEVEKEIDEAKAKVRDRVGMPDVLDGM

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