Basic Information | |
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Taxon OID | 3300031605 Open in IMG/M |
Scaffold ID | Ga0302132_10001378 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Western Arctic Ocean, Canada - CB9_32.1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 13892 |
Total Scaffold Genes | 21 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (66.67%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Western Arctic Ocean | |||||||
Coordinates | Lat. (o) | 77.9995 | Long. (o) | -150.0065 | Alt. (m) | Depth (m) | 121 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F011254 | Metagenome / Metatranscriptome | 293 | Y |
F012068 | Metagenome | 284 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0302132_1000137818 | F012068 | AGCAGG | MNALAKMFEPSKDRLLGNAKRMMETCTDPWFKQYWTKVYVHLCKQYKKLH |
Ga0302132_100013788 | F011254 | N/A | MRVDIKTKNSIKKVTITNLDKEILPKFSTIFISETWHKVLIPCSRDNIIDITISESGESIKHCLNSGRETEQGYEIWLHGNLAEYFSRISECIAQDDLLHYKDLNNKYLHTVSWNEKVEGDFIPTHVKQFFATGEGPYWYHKDDFANLPYVEYNGPNVDTDINLDEDLQYTDSKFYGEGQCKSLKQQPVLPTITTEQIKNKKLRETMQQFGFTEILQMQYVELQPNSVIPVHRDDFTYENGGHIINGPTQLYCILSGSSKDIKFKFKNVGLIDTSKPIFINNRKFIHSLVYTGDKPRGVLLAYGIRSN |
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