Scaffold Ga0302132_10011602

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0302132_10011602

Scaffold Ga0302132_10011602

Overview

Basic Information
Taxon OID	3300031605 Open in IMG/M
Scaffold ID	Ga0302132_10011602 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - CB9_32.1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4837
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (72.73%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	77.9995	Long. (^o)	-150.0065	Alt. (m)		Depth (m)	121
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F075433	Metagenome / Metatranscriptome	119	N
F086698	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0302132_100116027	F075433	GAG	MIMAKVNAFAIELKELGVEDFIFAAGSSAGLLAIQYDGDPRGVCFLAMSALMNAMFDSLDGGAGEIDVGGREDYSE
Ga0302132_100116029	F086698	GGA	MAQGNDSDKSQVHGTTGSGNILPISAITQESATSLLFTRQGREDFAASTHPIMTVPSHTISKQLPLLCGLQDVVAQTGFLLTADSSNTITVMIGGQTVSTTDGVPLVAGQSLMIDIVRLSKIYAIAAADPSGGTCNLFWLDM

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