NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302132_10018161

Scaffold Ga0302132_10018161


Overview

Basic Information
Taxon OID3300031605 Open in IMG/M
Scaffold IDGa0302132_10018161 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB9_32.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3824
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)77.9995Long. (o)-150.0065Alt. (m)Depth (m)121
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048555Metagenome148N
F049935Metagenome / Metatranscriptome146N

Sequences

Protein IDFamilyRBSSequence
Ga0302132_100181617F049935N/AMQTDIDFEYWDAQIKHFVSIFQSDSTSRADKEEAKTHLVEIHSRLTRDVRDLNKHIKELESEL
Ga0302132_100181618F048555N/AMKSVTITIGDYDLEIIEQIFEKESAFAPQDPRDELMIEVMRQVKDNPKIDLGADEVAEYQKAKTRFSKDLGADGKQVVGREGQYLSPQEAGLV

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