Scaffold Ga0302132_10018173

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0302132_10018173

Scaffold Ga0302132_10018173

Overview

Basic Information
Taxon OID	3300031605 Open in IMG/M
Scaffold ID	Ga0302132_10018173 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - CB9_32.1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3823
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (81.25%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	77.9995	Long. (^o)	-150.0065	Alt. (m)		Depth (m)	121
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029601	Metagenome	188	Y
F032335	Metagenome	180	Y
F040057	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302132_100181731	F029601	AGGAG	VRFDAPDDVFHGKKGIIVRFVESGIYTQGFHYEVQTFCGYTIVALSFEIQRL
Ga0302132_100181733	F032335	GGAGG	MKVSELKEGMLLRFKEPRVYKYLRDSGDDFWLDCGALDPNITLKWVQTGQPLMIYVGQELMEHPSHYGSYYNVRKVCVEGREAWMWPDAWRYVEAV
Ga0302132_100181739	F040057	N/A	MKPEIKDTDIIIRRAANGWIAFTGSEYEADHFMTTVYEDGEPWGEQEALIHLFREHFSYYVQSKKCGGIKLEVREKGYALEEDEEENV

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