NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302119_10005823

Scaffold Ga0302119_10005823


Overview

Basic Information
Taxon OID3300031606 Open in IMG/M
Scaffold IDGa0302119_10005823 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - AG5_Tmax
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5340
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)70.5467Long. (o)-122.9077Alt. (m)Depth (m)450
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015151Metagenome / Metatranscriptome257Y
F055210Metagenome / Metatranscriptome139Y
F076507Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0302119_100058235F015151AGGAMITLKNGLILSEDKNGFESYNHLTNKIDLKSFTKFNELPDIFYTELLEDDRTLLTNLDHPELSTILDRTNR
Ga0302119_100058237F055210AGGAGMLDLTTTFSAPGSITTPYLRSFMSTFMVGIRNRVANSSSVRNMYVKAFDRDEALGIASLLIRPYDMIVKDVVSPGDEIYGEDCSADADPLPILKSDVAERLEAGKVMNNIFGF
Ga0302119_100058239F076507AGGAGMSLILSIEEARERGMTRLVEQLERDLARRELLKMAPLEEVKDKTESPVWQTDIEEDWD
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
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