NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307999_1089678

Scaffold Ga0307999_1089678


Overview

Basic Information
Taxon OID3300031608 Open in IMG/M
Scaffold IDGa0307999_1089678 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)714
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5735Long. (o)77.9231Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044026Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0307999_10896781F044026N/AMLKQLLEKLSIYKGVKFELKGKQLFARSGNRTKLQEDTEAYFKKNKIIYSPRKKATELEVQGSSEVLVFKPLFAKGAGGVKFEHQITKDLNDWFSGVDYEDLQHSDTISQLVKTLRLRQDSRYKAQGVGAANTRRPPSFTANRMTVTNNTKGKV
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Institute for Fundamental Biomedical Research
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