Scaffold Ga0302135_10377289

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0302135_10377289

Scaffold Ga0302135_10377289

Overview

Basic Information
Taxon OID	3300031625 Open in IMG/M
Scaffold ID	Ga0302135_10377289 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - CBN3_surface
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	552
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	80.9595	Long. (^o)	-132.1842	Alt. (m)		Depth (m)	2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F046473	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302135_103772892	F046473	AGGAG	VSAGSGTTTTRSYMPGLFEALGNMPKREPKKFFVIVQDKEYEVSLEKKLWSQQHGEENLVFKDGEIVVKPAPLPKSRYRTLAKSEKGYFFEDD

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