NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302118_10359590

Scaffold Ga0302118_10359590


Overview

Basic Information
Taxon OID3300031627 Open in IMG/M
Scaffold IDGa0302118_10359590 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - AG5_33.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)661
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)70.5467Long. (o)-122.9077Alt. (m)Depth (m)74
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005620Metagenome395Y
F067209Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0302118_103595901F067209GAGMSLNSNPKDEEGQLSITDWVTQFSDGKSEVETAELAAKFMFAMSYYHEKMKLHILLHPLFYLAGFLTAYY
Ga0302118_103595902F005620AGGAGMLSTEQITKHIATFKTFCKNNRLRLKEDDDGLPVARAIGKFNTDQFFCNFKDGTIGVYVTRETPRQFTYLNKKLERLGCIPTQLGDFEAAYDLEWMNIPPVARLLKIRKGAAKVKDPKWLREL

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