NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307985_10424707

Scaffold Ga0307985_10424707


Overview

Basic Information
Taxon OID3300031629 Open in IMG/M
Scaffold IDGa0307985_10424707 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #80
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)512
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5958Long. (o)78.1913Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F103881Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0307985_104247071F103881N/AGSVIANVSAKGKGATDGIVRKVSGADRISILKTTLENLDAALDQQGLKIIKKTDYSLVNSKNVKDKARVLKIMEDRLQNDATDILTFSNQIRKTEKGNYIDIVYRKNAKGEVKAEMYEILDPNLHQMYKSFDMKAARHLSRADSMFSPLALMAEAVGTVTRPVAQKLGKF
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