Scaffold Ga0302138_10094687

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0302138_10094687

Scaffold Ga0302138_10094687

Overview

Basic Information
Taxon OID	3300031637 Open in IMG/M
Scaffold ID	Ga0302138_10094687 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - CBN3_32.1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1084
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	80.9595	Long. (^o)	-132.1842	Alt. (m)		Depth (m)	86
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F092731	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302138_100946874	F092731	AGGAGG	MSKNKLSTQATEVYNTLLELNWSEPYLTLEHIQAATGLGRSKLAPVLAELVGASKVLHGNEEALGELIETFTPKVKGVAYGYPLDYYTFDEWIEHKLKNEVTK

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.